User guide

• Before you start
• Getting started
  • 1. Create an alignment file
  • 2. Calculating structural properties and plotting them
  • 3. Using the PyMOL interface
  • 4. Creating Jalview Feature files
• Example outputs
  • Example PyMol API output
  • CDK2 Analysis
• Source Code Docs
  • Scripts
  • Source Code Docs

For further examples of the use of Polyphony please see the examples directory in the code distribution. This contains the code used to generate the figures in the paper.