polyphony_calculate_all_properties.pyΒΆ

Polyphony. Python code for the analysis of protein structure ensembles.

Copyright (C) 2013 William R. Pitt

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Calculate all properties on a given file. The list of allowed properties is read from the polyphony.conf file. See polyphony.cfg for more information on this file. The resulting property arrays are stored on disk in the ~/Polyphony data directory so that they don’t need to be recalculated, allowing a more interactive analysis of the data. If one or more property calculation fails, please comment out the corresponding line in the polyphony.conf file.

Usage: Calculate all properties on a given file.

Options:
-h, --help show this help message and exit
-f FILE, --file=FILE
 name of a fasta file created with create_fasta_file.py
-u, --update use this option if you want to recalculate property data