polyphony_plot_property_slice.py

Polyphony. Python code for the analysis of protein structure ensembles.

Copyright (C) 2013 William R. Pitt

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Plot a structural properties as a function of structure.

Usage: Plot a graph of each property values against structure.

Options:

-h, --help	show this help message and exit
-f FILE, --file=FILE
	name of a fasta file created with create_fasta_file.py
-p PROPERTY, --property=PROPERTY
	type of property to calculate, can be [backbone|sidech ain|phipsi|bfactor|sequence|calphas|crystal_contacts|p ockets|distance1000]
-u, --update	use this option if you want to recalculate property data
-a ALIGNMENT_POSITIONS, --alignment_positions=ALIGNMENT_POSITIONS
	list of one or more integers separated by commas, representing alignment positions (which start at 0)
-d DIMENSIONS, --dimensions=DIMENSIONS
	list of one or more integers separated by commas representing property dimensions (which start at 0) e.g. “212,220,232”