polyphony_plot_rmsd.py

Polyphony. Python code for the analysis of protein structure ensembles.

Copyright (C) 2013 William R. Pitt

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Usage: Plot rmsd for alignment against a reference chain. The reference can be selected by providing a chain id otherwise the one with most ordered residues is used.

Options:

-h, --help	show this help message and exit
-f FILE, --file=FILE
	name of a fasta file created with create_fasta_file.py
-s STRING, --string=STRING
	string
-u, --update	use this option if you want to recalculate property data