polyphony_within_cluster_variability.py ========== Polyphony. Python code for the analysis of protein structure ensembles. Copyright (C) 2013 William R. Pitt This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . Produce a representative set of structures for a given alignment Usage: Produce a non-redundant set of structures for a given alignment. A recommended cutoff when using backbone conformation is 0.025. Write a fasta file containing only the chosen structures. Options: -h, --help show this help message and exit -f FILE, --file=FILE name of a fasta file created with create_fasta_file.py -p PROPERTY, --property=PROPERTY type of property to calculate, can be [backbone|sidech ain|phipsi|bfactor|sequence|calphas|crystal_contacts|p ockets|distance1000] -n NUMBER, --number=NUMBER input a number -u, --update use this option if you want to recalculate property data