Scripts

These are some simple standalone command-line programs that illustrate some of the functionality available in Polyphony. After installation they should appear in your executable path. Use th -h option with any of them for help on how to use them.

• polyphony_Ete2_tree.py
• polyphony_PCA_plot.py
• polyphony_calculate_all_properties.py
• polyphony_cluster_backbones_by_PCA_loadings.py
• polyphony_create_fasta_file.py
• polyphony_druggable_pockets.py
• polyphony_get_non_redundant_structures.py
• polyphony_get_representative_structures.py
• polyphony_get_unique_structures.py
• polyphony_plot_Ramachandran.py
• polyphony_plot_backbone_variation.py
• polyphony_plot_property.py
• polyphony_plot_property_slice.py
• polyphony_plot_rmsd.py
• polyphony_plot_rmsf.py
• polyphony_plot_variability.py
• polyphony_print_structure_report.py
• polyphony_within_cluster_variability.py
• polyphony_write_jalview_feature_file.py
• polyphony_write_jalview_feature_from_PCA.py
• polyphony_write_newick.py